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Publications citing W&M HPC resources

2026

  1. Liang, Xiao. Investigating the Fermi-Hubbard model by the tensor-backflow method.  Physical Review B (2026).
  2. Gangani Ariyarathne, Isuru Ariyarathne, Greatness Emmanuel-King, Kate Lawal, and Alexander C. Nwala. 2026. Identifying the Geographic Foci of US Local News. In 18th ACM Web Science Conference (WebSci '26), May 26-29, 2026, Braunschweig, Germany. ACM, New York, NY, USA, 6 pages.
  3. St-Laurent, P. (2026) Water quality impacts during Hurricane Irene (2011) in a large coastal-plain estuary, Estuarine, Coastal and Shelf Science, 329(109623).  
  4. Yoo, H., Yu, H., Zhang, Y., Wu, W.F., Ye, F., Moghimi, S., Seroka, G., Yang, Z., and Myers, E.P. (2026) A bias correction method for total water level prediction at continental scale, Ocean Modelling, 199, 102642.
  5. Ye, F., Zhang, Y., Yu, H., Cassalho, F., Zyserman, J., Mani, S., Moghimi, S., Yoo, H., Seroka, G., Yang, Z., and Myers, E.P. (2026) Improving Compound Flood Modeling Skill in Coastal Transition Zones, Ocean Modelling, 199, 102643.
  6. Wu, W., Wang, Z., Zhang, Y., Shen, J., Tian, R., Linker, L.C., Cerco, C.F. (2026) Improving cross-scale hydrodynamic simulations in the Chesapeake Bay with physically based calibration, Ocean Modelling, 200, 102680.
  7. Wang, Z., Zhang, Y.J., Shen, J., Testa, J.M., Cerco, C.F., Linker, L., Tian, R. and Wu, W. (2026) Importance of Estuary–Ocean Exchange on Hypoxia in Mid-Lower Chesapeake Bay. Estuaries and Coasts 49, 19.
  8. Swenson, J., Runfola, D. 2026. Satellite-Based Detection of Unique Sociocultural Communities: The Case of Mennonite Colonies In Bolivia. Remote Sensing Letters.
  9. Baier, H., Runfola, D. 2025. Addressing Spatial Imprecision in Deep Learning for Satellite Imagery-Based Socioeconomic Predictions. GIScience & Remote Sensing.

2025

  1. J. Elmore and A. Roy, "FIDS: Accelerating Network Intrusion Detection Through Strategic Feature Selection," 2025 IEEE International Conference on Advanced Networks and Telecommunications Systems (ANTS), Delhi, India, 2025, pp. 1-6, .
  2. Friedrichs, M.A.M., A.J. Bever, S. Musick, and K. Hudson, 2025. The Chesapeake Bay Environmental Forecasting System, Benefits of Ocean Observing Catalog (BOOC): Vol. 3: Iss. 1, Article 4.
  3. Seyi A., R. Najjar, E. Rivest, R. Woodland, M. A. M. Friedrichs, P. St-Laurent, S. Davis. Environmental drivers of spatial variability in benthic macrofauna biomass and associated carbon fluxes in a large coastal-plain estuary. 2025 April. 
  4. Angela Liao, Lucas Teuber, Robert Pike and Christopher Abelt*, "Fluorescence of 8-Acyl-1-Pyrrolidinylnaphthalenes," Photochem 2025, 5(3), 27; 
  5. Yin, D., Ralston, D. K., Warner, J. C., Ganju, N. K., & Harris, C. K. (2025). Wind pumping dominates landward salt transport in a weakly tidal estuary. Journal of Geophysical Research: Oceans, 130(10), e2025JC022683 
  6. Chintalwad, S., and David J. Stark. 2025. “Enhanced gamma-ray generation and collimation in laser-plasma interactions via a cone-channel target design.” Physics of Plasmas 32, no. 8: 083106.
  7. Chintalwad, S., and David J. Stark. 2025. “Kilotesla magnetic field generation via ultraintense laser interaction with hollow microcapsule.” Physical Review E 112, no. 1: 015212.
  8. Calzada, J., Zhang, Y., Ye, F., and Cui, L. (2025) Development of a data-driven automatic unstructured mesh generation tool suitable for compound flooding studies, Environmental Modelling & Software, 192, 106587.
  9. Yu, H.C., Zhang, Y.J., Jan, S., Yu, J.C.S., Chu, C.H., Terng, C.T., and Chiu, C.M. (2024) Internal tides reverse tidal currents around Southern Taiwan. Journal of Geophysical Research: Oceans, 129, e2024JC020897.
  10. Cai, X., Qin, Q., Cui, L., Yang, X., Zhang, Y. J., and Shen, J. (2025) NAAC (v1.0): a seamless two-decade cross-scale simulation from the North American Atlantic Coast to tidal wetlands using the 3D unstructured-grid model SCHISM (v5.11.0), Geosci. Model Dev., 18, 7435–7449,
  11. Liu, Ming, Hao Chen, Jindong Wang, Liwen Wang, Bhiksha Raj, and Wensheng Zhang. 2025. “On Fairness of Unified Multimodal Large Language Model for Image Generation.” In Proceedings of the Thirty-ninth Annual Conference on Neural Information Processing Systems (NeurIPS 2025).
  12. Wu, Yuchen, Edward Sun, Kaijie Zhu, Jianxun Lian, Jose Hernandez-Orallo, Aylin Caliskan, and Jindong Wang. 2025. “Personalized Safety in LLMs: A Benchmark and A Planning-Based Agent Approach.” In Proceedings of the Thirty-ninth Annual Conference on Neural Information Processing Systems (NeurIPS 2025).
  13. St-Laurent, P., 2025, "Data archive of mid-21st century projections for the Amundsen Sea (western Antarctica)", Dataset (650 gigabytes), 91心頭利 ScholarWorks, .
  14. Horemans, D.M.L., Jennifer C. Lin, M.A.M. Friedrichs, P. St-Laurent, R.R. Hood, C. Brown, 2025. The effect of collinearity between observed and model derived training variables on estuarine algal species distribution models. Ecological Informatics, 103225, .
  15. Czajka, C., M.A.M. Friedrichs, E.B. Rivest, P. St-Laurent, M.J. Brush, F. Da, 2025. "Acidification and nutrient management are projected to cause reductions in shell and tissue weights of oysters in a coastal plain estuary", Biogeosciences, 22, 3181–3206,
  16. J. Zhao, R. Pike, and C. Abelt, “Peri-Substituted Acyl Pyrrolyl Naphthalenes: Synthesis, Reactions and Photophysical Properties,” Molecules 2025, 30(7), 1429;
  17. J. Giroux,, G. Ariyarathne, A.C. Nwala, C. Fanelli. "Unmasking social bots: how confident are we?" EPJ Data Sci. 14, 18.  (2025).
  18. C Fanelli, J. Giroux, J. Stevens, Mach. Learn.: Sci. Technol. 6 015028, "Deep(er) reconstruction of imaging Cherenkov detectors with swin transformers and normalizing flow models", (2025).
  19. Warnke, Scott, and Daniel Runfola. 2025. "From Prediction to Explanation: Using Explainable AI to Understand Satellite-Based Riot Forecasting Models." Remote Sensing 17, no. 2: 313.
  20. ​Lv, Zhonghui, Herman, J., Brewer, E., Nunez, K., Runfola, D. 2025. "BathyFormer: A transformer-based deep learning method to map nearshore bathymetry with high-resolution multispectral satellite imagery." Remote Sensing.  
  21. Baier, H.,Runfola, D. 2025. "Addressing Spatial Imprecision in Deep Learning for Satellite Imagery-Based Socioeconomic Predictions." GIScience & Remote Sensing.
  22. Yin, D., C.K. Harris, J.C. Warner. 2025. "Estuarine exchange flow in the Albemarle-Pamlico Estuarine System. Journal of Geophysical Research – Oceans."  .
  23. Zhang, Y., Anderson, J., Wu, C.H., Beletsky, D., Liu, Y., Huang, W., Anderson, E.J., Moghimi, S., Myers, E. (2025) "Cross-scale prediction for the Laurentian Great Lakes, Ocean Modelling", Volume 194, 102512,
  24. Y. Li, W. Panpan and H. Chen, "Can Reinforcement Learning Solve Asymmetric Combinatorial-Continuous Zero-Sum Games?", The Thirteenth International Conference on Learning Representations (2025), .
  25. X. Feng, Z. Yu, Y. Xiong and H. Chen, "Sequential Stochastic Combinatorial Optimization Using Hierarchal Reinforcement Learning", The Thirteenth International Conference on Learning Representations (2025), .
  26. Yu, H., Zhang, Y., Nerger, L., Lemmen, C., Yu, J.C.S., Chou, T., Chu, C., Terng,C. (2025) Development of a flexible data assimilation system for a 3D unstructured-grid ocean model under Earth System Modeling Framework, Ocean Modelling, 196, 102546,

2024

  1. Zhang, Y., Anderson, J., Park, K., Wu, C.H., Wipperfurth, S., Anderson, E., Pe'eri, S., Beletsky, D., Titze, D., Di Lorenzo, E., Moghimi, S., Seroka, G., Myers, E., Fujisaki-Manome, A., Kelley, J. (2024) "Debunking common myths in coastal circulation modeling", Ocean Modelling, 190, 102401, 
  2. St-Laurent, P., M.A.M. Friedrichs, 2024, An atlas for physical and biogeochemical conditions in the Chesapeake Bay, SEANOE, .
  3. St-Laurent, P., S.E. Stammerjohn, T. Maksym, 2024, Response of onshore oceanic heat supply to yearly changes in the Amundsen Sea icescape (Antarctica), J. Geophys. Res.: Oceans, 2024, 129(4), e2023JC020467, .
  4. St-Laurent, P., S.E. Stammerjohn, T. Maksym, 2024, Numerical experiments examining the response of onshore oceanic heat supply to yearly changes in the Amundsen Sea icescape (Antarctica), Dataset, SEANOE, .
  5. Tang, W., F. Da, J.C. Tracey, N. Intrator, M.A. Kunes, J.A. Lee, X.S. Wan, A. Jayakumar, M.A.M. Friedrichs, B. B. Ward, 2024. "Nutrient management offsets the effect of deoxygenation and warming on nitrous oxide emissions in a large US estuary. Science Advances: 10(51), .
  6. Bian, Z., S. Pan, R.G. Najjar, M.A.M. Friedrichs, E.E. Hofmann, M. Herrmann, K.E. Hinson, P. St-Laurent, H. Tian, 2024. "Divergent responses of nitrogen-species loadings to future climate change in the Chesapeake Bay watershed, Journal of Hydrology: Regional Studies", 56, 102060. .
  7. Da, F. , M.A.M. Friedrichs, P. St-Laurent, R.G. Najjar, E.H. Shadwick, E.G. Stets, 2024. "Influence of rivers, tides, and tidal wetlands on estuarine carbonate system dynamics. Estuaries and Coasts", 47, 2283-2305, .
  8. Schonfeld, A.J., G.M. Ralph, J. Gartland, P. St-Laurent, M.A.M. Friedrichs, R. Latour, 2024. "Hypoxia influences the extent and dynamics of suitable fish habitat in Chesapeake Bay, USA", Marine Ecology Progress Series 748, 117-135, .
  9. Friedland, K.D., P. Fratantoni, A. Silver, D.C. Brady, A. Gangopadhyay, S. I. Large, R.E. Morse, D.W. Townsend, M.A.M. Friedrichs, D.C. Melrose, 2024 "Changing source waters on the Northeast US continental shelf: variation in nutrient supply and phytoplankton biomass", Continental Shelf Research 281, 105319, .
  10. Hinson, K.E. , M.A.M. Friedrichs, R.G. Najjar, Z. Bian, M. Herrmann, P. St-Laurent, 2024. "Response of hypoxia to future climate change is sensitive to methodological assumptions." Scientific Reports, 14, 17544,
  11. Horemans, D.M.L., M.A.M. Friedrichs, P. St-Laurent, R.R. Hood, C. Brown, (2024). "Evaluating the skill of correlative species distribution models trained with mechanistic model output. Ecological Modelling" 491, 110692,
  12. Zheng, G., S. Schollaert Uz, P. St-Laurent, M.A.M. Friedrichs, A. Mehta, P.M. DiGiacomo, (2024). "Hypoxia forecasting for Chesapeake Bay using artificial intelligence. Artificial intelligence for the earth systems", e230054, 
  13. C. Abelt, I. Day, J. Zhao, and R. Pike, “Fluorescence of Half-Twisted 10-Acyl-1-methyltetrahydrobenzoquinolines,” Molecules 2024, 29(13) 3016;
  14. C. Abelt and K. Sweigart, “Twisted 8-Acyl-1-dialkyl-amino-naphthalenes Emit from a Planar Intramolecular Charge Transfer Excited State,” Photochem 2024, 4, 1-13; .
  15. C. Fanelli, J. Giroux, P. Moran, H. Nayak, K. Suresh and E. Walter, JINST 19 C07011, "Physics event classification using Large Language Models", (2024).
  16. Wang, Q., Zhang, Y., Chai, F., Zhang, Y. J., and Zampieri, L. (2024) "Development of a total variation diminishing (TVD) sea ice transport scheme and its application in an ocean (SCHISM v5.11) and sea ice (Icepack v1.3.4) coupled model on unstructured grids." Geosci. Model Dev., 17, 7067–7081,
  17. Yin, D., L. Cui, C.K. Harris, J.M. Moriarty, H. Beck, K. Maiti. 2024. "The Role of benthic fluxes in acidifying the bottom waters in the northern Gulf of Mexico hypoxic zone based on an updated water column biogeochemical-seabed diagenetic and sediment transport model." Journal of Advances in Modeling Earth Systems, 16, e2023MS0040045,
  18. L. Cui, F. Ye, Y. Zhang, H.C. Yu, Z. Wang, S. Moghimi, G. Seroka, J. Riley, S. Pe'eri, S. Mani, E.P. Myers, K. Park, L. Tang, Z. Yang, Y.M. Wang "Total water level prediction at continental scale: coastal ocean." Ocean Modell., 192 (2024), Article 102451,
  19. Lv, Zhonghui, Karinna Nunez, Ethan Brewer, and Dan Runfola. 2023. “Mapping the Tidal Marshes of Coastal Virginia: A Hierarchical Transfer Learning Approach.” GIScience & Remote Sensing 61 (1). .
  20. Lv, Zhonghui, Dan Runfola, Julie D. Herman, Ethan Brewer, and Karinna Nunez. "A Transformer-based Deep Learning Method to Map Nearshore Bathymetry with Satellite Imagery." AGU24 (2024) 
  21. Warnke, S. and Runfola, D. (2024), Predicting Protests and Riots in Urban Environments With Satellite Imagery and Deep Learning. Transactions in GIS, 28: 2309-2327.
  22. Heather Baier and Dan Runfola. 2024. Spatially Adaptive Convolutional Networks with Coordinate-Conditioned Layers. In Proceedings of the 32nd ACM International Conference on Advances in Geographic Information Systems (SIGSPATIAL '24). Association for Computing Machinery, New York, NY, USA, 549–552.
  23. Goodman, S., BenYishay, A., & Runfola, D. (2024). Spatiotemporal prediction of conflict fatality risk using convolutional neural networks and satellite imagery. Remote Sensing, 16(18), 3411.
  24. Runfola, Dan, Anthony Stefanidis, Zhonghui Lv, Joseph O’Brien, and Heather Baier. 2024. “A Multi-Glimpse Deep Learning Architecture to Estimate Socioeconomic Census Metrics in the Context of Extreme Scope Variance.” International Journal of Geographical Information Science 38 (4): 726–50.
  25. Cristiano Fanelli, James Giroux, Diana McSpadden, Kishansingh Rajput, Karthik Suresh, Evaristo Cisbani, Wouter Deconinck, Eric Walter, Andrea Bressan, Markus Diefenthaler, Tanja Horn and Torre Wenaus. AI4EIC Hackathon: PID with the ePIC dRICH. EPJ Web of Conf., 295 (2024) 08004. 
  26. Goodman, S., Zhang, S., Malik, A.A. et al. AidData’s Geospatial Global Chinese Development Finance Dataset. Sci Data 11, 529 (2024).
  27. Plumptre, A., Hayes, J., Baisero, D., Rose, R., Holness, S., von Staden, L., & Smith, R. J. (2024). Strengths and complementarity of systematic conservation planning and Key Biodiversity area approaches for spatial planning. Conservation Biology, e14400.
  28. Goodman, S., Zhang, S., Malik, A.A. et al. AidData’s Geospatial Global Chinese Development Finance Dataset. Sci Data 11, 529 (2024).
  29. St-Laurent, P., M.A.M Friedrichs, 2024, On the sensitivity of coastal hypoxia to its external physical forcings, Journal of Advances in Modeling Earth Systems, 16, e2023MS003845,
  30. Abelt C, Sweigart K. Twisted 8-Acyl-1-dialkyl-amino-naphthalenes Emit from a Planar Intramolecular Charge Transfer Excited State. Photochem. 2024; 4(1):1-13.
  31. T. Whyte, A. Stathopoulos, E. Romero, K. Orginos, "Optimizing Shift Selection in Multilevel Monte Carlo for Disconnected Diagrams in Lattice QCD”, Computer Physics Communications, Vol. 294, 2024, .
  32. Allaire, C., Ammendola, R., Aschenauer, E.-C., Balandat, M., Battaglieri, M., Bernauer, J., Bondì, M., Branson, N., Britton, T., Butter, A., Chahrour, I., Chatagnon, P., Cisbani, E., Cline, E. W., Dash, S., Dean, C., Deconinck, W., Deshpande, A., Diefenthaler, M., … Zurita, P. (2024). Artificial Intelligence for the Electron Ion Collider (AI4EIC). In Computing and Software for Big Science (Vol. 8, Issue 1). Springer Science and Business Media LLC.
  33. Burroughs, P. G., Wilkinson, W. C., Majumdar, E., Bole, J. D., Subedi, R., Kerrigan, J. T., & Kidwell, N. M. (2024). Infrared-driven dynamics and scattering mechanisms of NO radicals with propane and butane: impacts of pseudo Jahn–Teller effects. Physical Chemistry Chemical Physics, 26(38), 24849–24860.
  34. Davis, J. P., Burroughs, P. G., Wilkinson, W. C., Majumdar, E., & Kidwell, N. M. (2024). Bimolecular collision outcomes on multidimensional potential energy surfaces: infrared spectroscopy and activation of NO–alkane collision complexes. Faraday Discussions, 251, 262–278.

2023

  1. Simmons ESG, Cooley AM, Puzey JR, Conradi~Smith GD. "A multigenerational Turing model reproduces transgressive petal spot phenotypes in hybrid Mimulus." Bulletin of Mathematical Biology 85:120 (2023). 
  2. Ruby W. Neisser, John P. Davis, Megan E. Alfieri, Hayden Harkins, Andrew S. Petit, Daniel P. Tabor, and Nathanael M. Kidwell The Journal of Physical Chemistry A 2023 127 (50), 10540-10554
    DOI: 10.1021/acs.jpca.3c04472 
  3. Cai, X., Shen, J., Zhang, Y., Qin, Q., and Linker, L. (2023). Sea-level rise impacts on tidal marshes and estuarine biogeochemical processes. Journal of Geophysical Research: Biogeosciences, 128, e2023JG007450. 
  4. Huang, W., Ye, F., Zhang, Y., Du, J., Park, K., Yu, H.C., Wang, Z. (2023) Hydrodynamic responses of estuarine bays along the Texas-Louisiana coast during Hurricane Harvey, Ocean Modelling, 102302, 
  5. Boyle, J. H., Strickler, S., Twyford, A. D., Ricono, A., Powell, A., Zhang, J., Xu, H., Smith, R., Dalgleish, H. J., Jander, G., Agrawal, A. A., & Puzey, J. R. (2023). Temporal matches between monarch butterfly and milkweed population changes over the past 25,000 years. In Current Biology (Vol. 33, Issue 17, pp. 3702-3710.e5). Elsevier BV.
  6. Chiu C-M, Chuang LZ-H, Chuang W-L, Wu L-C, Huang C-J, Zhang YJ. Utilizing Numerical Models and GIS to Enhance Information Management for Oil Spill Emergency Response and Resource Allocation in the Taiwan Waters. Journal of Marine Science and Engineering. 2023; 11(11):2094.
  7. St-Laurent, P., M.A.M. Friedrichs (2023) Dataset: Numerical experiments on the sensitivity of Chesapeake Bay hypoxia to physical forcings and the associated code and input files, dataset (size 32 gigabytes), 91心頭利 ScholarWorks,
  8. St-Laurent, P. (2023) Dataset: A numerical simulation of the ocean, sea ice and ice shelves in the Amundsen Sea (Antarctica) over the period 2006-2022 and its associated code and input files, dataset (size 2.2 terabytes), 91心頭利 ScholarWorks,
  9. Rex Kincaid, Cameron Curtis, and Logan Wolf, ``Analysis of Centralized and Distributed Air Traffic Management Systems via Mixed Integer Linear Programs,'' Proceedings of the 2023 MODSIM World Conference, Norfolk, VA, May 22-23, 2023, No. 3018 (9 pages) .
  10. Ye, F., Cui, L., Zhang, Y., Wang, Z., Moghimi, S., Myers, E., Seroka, G., Zundel, A., Mani, S., Kelley, J.G.W. (2023) A parallel Python-based tool for meshing watershed rivers at continental scale, Environmental Modelling & Software, 166, 105731.
  11. Zhang, Y. J., Fernandez-Montblanc, T., Pringle, W., Yu, H.-C., Cui, L., and Moghimi, S. (2023) Global seamless tidal simulation using a 3D unstructured-grid model (SCHISM v5.10.0), Geoscientific Model Development, 16, 2565-2581.
  12. Huang, W., Zhang, Y.J, Liu, Z., Yu, H.C., Liu, Y., Lamont, S., Zhang, Y., Hirpa, F., Li, T., Baker, B., Zhang, W., Patel, S., and Mori, N. (2023) Simulation of compound flooding in Japan using a nationwide model, Natural Hazards.
  13. Zhang, Y., Wu, C.H., Anderson, J., Liu, Y., Danilov, S., Wang, Q., and Wang, Q. (2023) Lake ice simulation using a 3D unstructured grid model. Ocean Dynamics, 73:219–230.
  14. Lv, Z.†, Nunez, K., Brewer, E.†, Runfola, D. 2023. pyShore: A deep learning toolkit for shoreline structure mapping with high-resolution orthographic imagery and convolutional neural networks. Computers & Geosciences.
  15. Horemans, D.M.L., M.A.M. Friedrichs, P. St-Laurent, R.R. Hood, C.W. Brown, 2023. Forecasting Prorocentrum minimum blooms in the Chesapeake Bay using empirical habitat models. Front. Mar. Sci., 10,
  16. Hinson, K.E., M.A.M. Friedrichs, R.G. Najjar, M. Herrmann, Z. Bian, G. Bhatt, P. St-Laurent, H. Tian, G. Shenk, 2023. Impacts and uncertainties of climate-induced changes in watershed inputs on estuarine hypoxia, Biogeosciences, 20, 1937-1961,
  17. G. S. Chiu, M. Mitchell, J. Herman, C. Longo, and K. Davis, “Enhancing assessments of blue carbon stocks in marsh soils using Bayesian mixed-effects modeling with spatial autocorrelation — proof of concept using proxy data,” Frontiers in Marine Science, vol. 9. Frontiers Media SA, Jan. 12, 2023. 

 2022

  1. Q. Qin, J. Shen, T. D. Tuckey, X. Cai, and J. Xiong, “U,” Journal of Marine Science and Engineering, vol. 10, no. 9. MDPI AG, p. 1299, Sep. 14, 2022.
  2. Z. Lv, K. Nunez, E. Brewer, and D. Runfola, “,” Computers & Geosciences, vol. 171. Elsevier BV, p. 105296, Feb. 2023 [Online]. Available:
  3. L. S. Storch and S. L. Day, “,” Journal of Theoretical Biology, vol. 554. Elsevier BV, p. 111274, Dec. 2022 [Online]. Available:
  4. J. R. Bradley and A. P. Blossom, “,” ACM Transactions on Evolutionary Learning and Optimization. Association for Computing Machinery (ACM), Jan. 30, 2023 . Available:
  5. Allan, J.C., Zhang, J., O'Brien, F. and Gabel, L., 2022. Oregon Department of Geology and Mineral Industries, Open-file-report O-22-07, Portland, Oregon, 76 pp.
  6. D. Runfola, H. Baier, L. Mills, M. Naughton‐Rockwell, and A. Stefanidis, Transactions in GIS, vol. 26, no. 6. Wiley, pp. 2495–2518, Jun. 27, 2022.
  7. E. Brewer, J. Lin, and D. Runfola, Information Sciences, vol. 603. Elsevier BV, pp. 244–261, Jul. 2022 [Online]. Available:
  8. Ethan Brewer. "Deep Learning from Space: Methods & Applications in High-Resolution Satellite Imagery Analysis." W&M Ph.D. Thesis. ProQuest. 2022.
  9. Wang, H., Gong, D., Friedrichs, M., Harris, C., Miles, T., Yu, H.-C. and Zhang, Y., Frontiers in Marine Science, vol. 9. Frontiers Media SA, Jun. 16, 2022. 
  10. Xiang Hu, Timo Hyart, Dmitry I. Pikulin, Enrico Rossi,
    , Phys. Rev. B 105, L140506 (2022).
  11. S. Saporito and D. Maliniak, , Electoral Studies, vol. 80. Elsevier BV, p. 102526, Dec. 2022. Available:
  12. Cassidy D. Peterson, Michael J. Wilberg, Enric Cortés, Dean L. Courtney, and Robert J. Latour. 79(9): 1497-1513.
  13. Flynn, E. R., Kuehl, S. A., Harris, C. K., & Fair, M. J. (2022). In Marine Geology (Vol. 447, p. 106782). Elsevier BV.
  14. Runfola, D., Baier, H., Mills, L., Naughton‐Rockwell, M., & Stefanidis, A. (2022). In Transactions in GIS. Wiley.
  15. Brewer, E., Lin, J., Runfola, D.,  In Information Sciences (Vol. 603, pp. 244–261). Elsevier BV.
  16. Hannah J. Naldrett and Christopher J. Abelt, Journal of Photochemistry and Photobiology A: Chemistry 2022, 114121
  17. Brewer, E., Lin, J., & Runfola, D. (2022). (Vol. 603, pp. 244–261). Elsevier BV.
  18. Frankel, L.T., M.A.M. Friedrichs, P. St-Laurent, A.J. Bever, R. N. Lipcius, G. Bhatt, G.W. Shenk, 2022. Science of the Total Environment (814) 152722,
  19. Cai, X., Qin, Q., Shen, J. and Zhang, Y.J. (2022), Limnol. Oceanogr. Lett, 7: 210-217.
  20. Huang, W., Zhang, Y., Wang, Z., Ye, F., Moghimi, S., Myers, E., Yu, H. (2022)   Ocean Dynamics, 72:187-205.
  21. Wang, Z., Li, D., Xue, H., Thomas, A. C., Zhang, Y. J., & Chai, F. (2022). Journal of Geophysical Research: Oceans, 127, e2021JC017663.
  22. Karthik, N., & Narayanan, R. (2022). In Physical Review D (Vol. 106, Issue 1). American Physical Society (APS).
  23. Smith, R. D., Puzey, J. R., & Conradi Smith, G. D. (2022). In R. M. Marsano (Ed.), PLOS ONE (Vol. 17, Issue 7, p. e0270839). Public Library of Science (PLoS).
  24. Brianna N. Peterson, Megan E. Alfieri, David J. Hood, Christian D. Hettwer, Daniel V. Costantino, Daniel P. Tabor, and Nathanael M. Kidwell, . The Journal of Physical Chemistry A 2022 126 (27), 4313-4325 DOI: 10.1021/acs.jpca.2c00585
  25. Longo, Christian, (2022). Undergraduate Honors Theses. 91心頭利. Paper 1824.
  26. A. C. Hyman, G. S. Chiu, M. C. Fabrizio, and R. N. Lipcius, “” Frontiers in Marine Science, vol. 9. Frontiers Media SA, Mar. 17, 2022 [Online]. Available:
  27. Metzger, S., & Jones, B. (2022). Political Analysis, 30(2), 151-166. doi:10.1017/pan.2021.14
  28. Eskridge, B., Krakauer, H., Shi, H., Zhang, S.  Journal of Chemical Physics, 156, 014107 (2022); 

2021

  1. Dukhovskoy, D. S., Morey, S. L., Chassignet, E. P., Chen, X., Coles, V. J., Cui, L., Harris, C. K., Hetland, R., Hsu, T.-J., Manning, A. J., Stukel, M., Thyng, K., & Wang, J. (2021). In Frontiers in Marine Science (Vol. 8). Frontiers Media SA. https://doi.org/10.3389/fmars.2021.629299
  2. Brewer, E., Lin, J., Kemper, P., Hennin, J., & Runfola, D. (2021). In T. R. Gadekallu (Ed.), PLOS ONE (Vol. 16, Issue 7, p. e0253370). Public Library of Science (PLoS). https://doi.org/10.1371/journal.pone.0253370
  3. Runfola, D., Stefanidis, A., & Baier, H. (2021). In Remote Sensing Letters (Vol. 13, Issue 1, pp. 87–97). Informa UK Limited. https://doi.org/10.1080/2150704x.2021.1987575
  4. Bahgat, K., & Runfola, D. (2021). In C. R. da Silva (Ed.), PLOS ONE (Vol. 16, Issue 11, p. e0260039). Public Library of Science (PLoS). https://doi.org/10.1371/journal.pone.0260039
  5. Qiong Wu, Adam Hare, Sirui Wang, Yuwei Tu, Zhenming Liu, Christopher G. Brinton, and Yanhua Li. 2021. . ACM Trans. Intell. Syst. Technol. 12, 5, Article 54 (October 2021), 29 pages.
  6. Scavia, D., I. Bertani, J.M. Testa, A.J. Bever, J.D. Blomquist, M.A.M. Friedrichs, L.C. Linker, B.D. Michael, R.R. Murphy, G.W. Shenk, 2021. Advancing estuarine ecological forecasts: seasonal hypoxia in Chesapeake Bay. Ecological Applications, 31(6), e02384, 
  7. Lopez, A.G., R.G. Najjar, M.A.M. Friedrichs, M.A. Hickner, D.H. Wardrop, 2021. Estuaries as filters for riverine microplastics: simulations in a large, coastal-plain estuary. Front. Mar. Sci., 8, 
  8. Kopera, K. M.; Tuckman, H.G.; Hoy, G.R.;  Wustholz, K.L. Origin of Kinetic Dispersion in Eosin-Sensitized TiO2: Insights from Single-Molecule Spectroscopy. J. Phys. Chem. C 2021, 125, 43, 23634–23645
  9. Karpie, J., Orginos, K., Radyushkin, A. et al. T J. High Energ. Phys. 2021, 24 (2021). https://doi.org/10.1007/JHEP11(2021)024
  10. Nunez, K. Zhang, Y., Bilkovic, D.M., Hershner, C. (2021) Ocean and Coastal Management, 214, 105898.
  11. Brewer E, Lin J, Kemper P, Hennin J, Runfola D (2021) PLoS ONE 16(7): e0253370. https://doi.org/10.1371/journal.pone.0253370
  12. Hinson, K.E., Friedrichs, M.A.M., St-Laurent, P., Da, F., & Najjar, R.G. (2021).  Journal of the American Water Resources Association, 1-21, .
  13. Karthik, N. (2021). Physical Review D, 103(7).
  14. Turner, J. S., St-Laurent, P., Friedrichs, M. A. M., & Friedrichs, C. T. (2021). E Science of the Total Environment, 769, 145157.
  15. Moriarty, J.M., M.A.M. Friedrichs, C.K. Harris. 2021. Estuaries and Coasts,44, pages103–122. 
  16. Zhang, Y. J. (2021). 81, 220–236.
  17. Huang, W., Ye, F., Zhang, Y. J., Park, K., Du, J., Moghimi, S., Myers, E., Pe’eri, S., Calzada, J. R., Yu, H. C., Nunez, K., & Liu, Z. (2021). Ocean Modelling, 158, 101735.
  18. Cui L, Harris CK and Tarpley DRN (2021) Mar. Sci. 8:629476. doi: 10.3389/fmars.2021.629476
  19. Ye, F. and Huang, W. and Zhang, Y. J. and Moghimi, S. and Myers, E. and Pe'eri, S. and Yu, H.-C. (2021) , 21, 1703-1719, Natural Hazards and Earth System Sciences,
  20. Cai, X., J. Shen, Y.J. Zhang, Q. Qin, Z. Wang, and H.V Wang. (2021) Journal of the American Water Resources Association 118.
  21. Bever, A.J., M.A.M. Friedrichs, P. St-Laurent. 2021. . Environmental Modeling and Software 140. DOI: 10.1016/j.envsoft.2021.105036
  22. Thomas, Stuart and Monahan, Christopher, "" (2021). Undergraduate Honors Theses. Paper 1621.
  23. Dartiailh, M.C., Cuozzo, J.J., Elfeky, B.H. et al. Nat Commun 12, 78 (2021).
  24. Beckensteiner, J., A. Scheld, P. St-Laurent, M.A.M. Friedrichs, D. Kaplan, 2021, , Aquaculture, 
  25. Chappie, Emily E., (2021). Undergraduate Honors Theses. Paper 1622. 

Oral/Poster Presentations:

  1. Huffman, M., Ward, E., Kay, J., Rhoden, A., & Stickle, A. (2021). . In Lunar and Planetary Science Conference (pp. 1663). 
  2. Chappie, E. E., Tabor, D. P. and Kidwell, N. M. (2021).  In International Symposium on Molecular Spectroscopy
  3. Turner, J. S. (2021). Virginia Institute of Marine Science, 91心頭利. Ph. D. Dissertation.
  4. Dan Yu, Joseph Zhang, Lars Nerger, Jason Yu, C. Chu, C. Terng (2021) Ensemble data assimilation in a 3D unstructured grid ocean model with application to typhoon study, American Geophysical Union Fall Meeting.
  5. Thomas, Stuart and Monahan, Christopher, "Topology of the O(3) non-linear sigma model under the gradient flow" (2021). Undergraduate Honors Theses. 91心頭利. Paper 1621.
  6. Frankel, Luke, 2021. VIMS MS thesis.

2020

  1. Angello, N.H.; Wiley, R.E.; Abelt, C.J.; Scheerer, J.R. . Molecules 2020, 25, 3358.
  2. Wang, C., Z. Liu, C.K. Harris, X. Wu, H. Wang, C. Bian, N. Bi, H. Duan, J. Xu. 2020. , Bohai, China, Journal of Geophysical Research – Oceans. https://doi.org/10.1029/ 2020JC016069.
  3. Runfola, D.; Batra, G.; Anand, A.; Way, A.; Goodman, S. Sustainability 2020, 12, 3225.
  4. Runfola D, Anderson A, Baier H, Crittenden M, Dowker E, Fuhrig S, et al. (2020) PLoS ONE 15(4): e0231866. https://doi.org/10.1371/journal.pone.0231866

  5. Goodman, S, BenYishay, A, Runfola, D. Transactions in GIS. 2020; 00: 1– 18. https://doi.org/10.1111/tgis.12661

  6. St-Laurent, P., M.A.M. Friedrichs, R.G. Najjar, E.H. Shadwick, H. Tian, Y. Yao, E.G. Stets (2020) , Biogeosciences, 17, 3779-3796. https://doi/10.5194/bg-17-3779-2020

  7. Kim, G.E., St-Laurent, P., Friedrichs, M.A.M. et al. Estuaries and Coasts, (2020).  https://doi.org/10.1007/s12237-020-00760-x

  8. Solis, J., & Waggoner, P. (2020). British Journal of Political Science, 1-20.

  9. Nunez, K., Zhang, Y.J., Herman, J., Reay, W., and Hershner, C. (2020) Ocean Dynamics. https://doi.org/10.1007/s10236-020-01380-6

  10. Zhang, Y.J., Ye, F., Yu, H. et al. Ocean Dynamics 70, 621–640 (2020).
  11. Liu, Z., Wang, H.V., Zhang, Y., Magnusson, L., Loftis, J.D., and Forrest, D. (2020) , Estuarine, Coastal and Shelf Science, 233.   
  12. Du, J., Park, K., Yu, X., Zhang, Y., Ye, F. (2020) , Science of The Total Environment, 704. 
  13.  Ye, F., Zhang, Y., Yu, H., Sun, W., Moghimi, S., Myers, E.P., Nunez, K., Zhang, R., Wang, H.V., Roland, A., Martins, K., Bertin, X., Du, J., and Liu, Z. (2020) , Ocean Modelling, 145.  
  14. Chiciak, A.; Vitali, E.; Zhang, S. Phys. Rev. B 2020, 102 (21). https://doi.org/10.1103/physrevb.102.214512.
  15. Allan, J.C., Zhang, J., O'Brien, F. and Gabel, L., 2020. O-20-08, Portland, Oregon, 78 pp.
  16. Sufian, R. S.; Egerer, C.; Karpie, J.; Edwards, R. G.; Joó, B.; Ma, Y.-Q.; Orginos, K.; Qiu, J.-W.; Richards, D. G. Phys. Rev. D 2020, 102 (5). .
  17. Ibrahim, M. A.; Kayiran, O.; Eckert, Y.; Loh, G. H.; Jog, A. In Proceedings of the ACM International Conference on Parallel Architectures and Compilation Techniques; ACM, 2020. .
  18. Liu, H.; Pai, S.; Jog, A. In Proceedings of the Twenty-Fifth International Conference on Architectural Support for Programming Languages and Operating Systems; ACM, 2020. .
  19. Kadam, G.; Zhang, D.; Jog, A. In 2020 IEEE International Symposium on High Performance Computer Architecture (HPCA); IEEE, 2020. .
  20. Herrmann, M.; Najjar, R. G.; Da, F.; Friedman, J. R.; Friedrichs, M. A. M.; Goldberger, S.; Menendez, A.; Shadwick, E. H.; Stets, E. G.; St‐Laurent, P. J. Geophys. Res. Oceans 2020, 125 (7). .
  21. Crear, D.; Latour, R.; Friedrichs, M.; St-Laurent, P.; Weng, K. Mar. Ecol. Prog. Ser. 2020, 652, 123–136. .
  22. Crear, D. P.; Watkins, B. E.; Friedrichs, M. A. M.; St-Laurent, P.; Weng, K. C. Front. Mar. Sci. 2020, 7. .
  23. Cai, X.; Zhang, Y. J.; Shen, J.; Wang, H.; Wang, Z.; Qin, Q.; Ye, F. A J Am Water Resour Assoc 2020. .
  24. Chang, J.; Lee, G.; Harris, C. K.; Song, Y.; Figueroa, S. M.; Schieder, N. W.; Lagamayo, K. D. Marine Geology 2020, 430, 106364. .
  25. Harris, C.; Syvitski, J.; Arango, H. G.; Meiburg, E. H.; Cohen, S.; Jenkins, C. J.; Birchler, J.; Hutton, E. W. H.; Kniskern, T. A.; Radhakrishnan, S.; Auad, G. JMSE 2020, 8 (8), 586. .
  26. Wang, C.; Liu, Z.; Harris, C. K.; Wu, X.; Wang, H.; Bian, C.; Bi, N.; Duan, H.; Xu, J. J. Geophys. Res. Oceans 2020, 125 (6). .
  27. B. Joó, J. Karpie, K. Orginos, A. V. Radyushkin, D. G. Richards and S. Zafeiropoulos, : Approaching the Physical Point, Phys. Rev. Lett. 125 (2020) 232003, [2004.01687].
  28. Da, F., Friedrichs, M.A.M., St-Laurent, P., Shadwick, E.H., Najjar, R.G., & Hinson, K. (2020). Journal of Geophysical Research: Oceans, 126(6), e2021JC017239.
  29. Allan, J.C., Zhang, J., O'Brien, F. and Gabel, L., 2020. Coos Bay tsunami modeling: O-20-08, Portland, Oregon, 78 pp.

Oral/Poster Presentations:

  1. Turner, J.S., St-Laurent, P., Friedrichs, M.A.M., & Friedrichs, C.T. (2020) Water clarity impacts of sediment inputs from shoreline erosion in the Chesapeake Bay: a modeling study. June 8, 2020 at the Chesapeake Community Research Symposium, Annapolis, MD (Online due to COVID-19). 

  2. Turner, J. S., St-Laurent, P., Friedrichs, M. A. M., & Friedrichs, C. T. Shoreline erosion impacts on Chesapeake Bay water clarity: an analysis of effects on light attenuation using a coupled hydrodynamic-biogeochemical model. Ocean Sciences meeting in San Diego, CA in February 2020.

  3. Kopera, K.M., Tuckman, H.G., Wustholz, K.L. Investigating Electron Transfer Dynamics of Eosin \
    Y on TiO2 Using Single Molecule Spectroscopy and Monte Carlo Simulations. 29th Winter Inter-American Photochemical Society Conference, January 2020, Sarasota, FL.

  4. Hinson, K.E., Friedrichs, M.A.M., St-Laurent, P., Najjar, R.G., & Da, F. (2020) Drivers of warming in the Chesapeake Bay: a 35-year retrospective analysis. June 8, 2020 at the Chesapeake Community Research Symposium, Annapolis, MD (Online due to COVID-19).

  5. Hinson, K.E., Friedrichs, M.A.M., St-Laurent, P., Najjar, R.G. (2020) A thirty-year retrospective analysis of Chesapeake Bay warming, Abstract [CB34A-03] at 2020 Ocean Sciences Meeting, San Diego, CA, 16-21 Feb.

  6. Bever, A.J., M.C. Fabrizio, M.A.M. Friedrichs, and T.D. Tuckey. 2020. Estimating Habitat Suitability for Forage Fish in Chesapeake Bay: Does the Choice of the Hydrodynamic Model Matter? Chesapeake Research and Modeling Symposium. 8-10 Jun

  7.  Bever, A.J., M.A.M. Friedrichs, D. Da, K. Hudson, P. St-Laurent, and A. Morandi. 2020. Real-time Forecasts of Acidification and Hypoxia in the Chesapeake Bay: Model Setup and Online Visualization. Ocean Sciences. San Diego, CA 16-21 Feb\