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College of Arts & Sciences
Biology

Biology Department Refereed Publications with Student Authors 2018-2023

Biology Department Refereed Publications with Student Authors 2018-2023

Faculty co-authors in bold
High School Student #
Undergraduate*
Graduate student**
Postdoc***
other institution undergraduate student$

 

2023

  1. Barnes, D.K.* and J.D. Allen. 2023. Predators induce phenotypic plasticity in echinoderms across life history stages. Biological Bulletin. 244: 103-114.
  2. Richardson, E.L.** and J.D. Allen. 2023. Carry-over effects in a sea star: juvenile resource availability does not compensate for a poor larval environment. Marine Biology. 170: 25.
  3. **Wang, M., Roggero, V.R., Allison, L.A. (2023) Mediator subunit MED1 differentially modulates mutant thyroid hormone receptor intracellular dynamics in Resistance to Thyroid Hormone syndrome. Molecular and Cellular Endocrinology 559: 111781.
  5. Reinsel, M.B., *M.A. Gibson, *N.M. Klesch, & R.M. Chambers. 2023. Bycatch
  6. reduction devices exclude diamondback terrapins and maintain blue crab catch in
  7. two Virginia tidal creeks. Marine and Coastal Fisheries: Dynamics, Management,
  8. and Ecosystem Science, 15, e10263.
  9. Leu, M., R.E. Isdell, **R.M. Galvin III, *A.J. Rapp, **S.D. Mason, D.M. Bilkovic,
  10. and R.M. Chambers. 2023. “ Comparable use of tidal living shorelines and
  11. natural-fringe marshes by herons and shorebirds.” Ecosphere 14:
  12. e4683.
  13. Zhao, J., C. Seemanti, R. Chambers, P. Weisenhorn, R. Travieso, S. Stumpf, E.
  14. Standen, H. Briceno, T. Troxler, E. Gaiser, J. Kominoski, B. Dhillon, W.
  15. Martens-Habbena. 2023. Year-around survey and manipulation experiments
  16. reveal differential sensitivities of soil prokaryotic and fungal communities to
  17. saltwater intrusion in Florida Everglades wetlands. Science of The Total
  18. Environment 85
  19. Brittain, C., **Bessler, A.M., *Elgin, A.S., Layko, R.B., Park, S., Still, S.E., Wada, H., Swaddle, J.P., & Cristol, D.A. Mercury causes degradation of spatial cognition in a model songbird species. Ecotoxicology and Environmental Safety 264:115483
  20.  Boyle, JH,*** S Strickler, AD Twyford, A Ricono**, A Powell, J Zhang, H Xu, R
  21. Smith, HJ Dalgleish, G Jander, AA Agrawal, JR Puzey. 2023. Temporal matches
  22. between monarch butterfly and milkweed population changes over the past 25,000
  23. years. Current Biology 33(17): 2701-3710.e5.
  24. .
  25. Dalgleish, HJ, L Monteith*, E Collins*. 2023. Age, size and neighbors influence the
  26. survival and growth of understory trees in a naturally reproducing population of
  27. American chestnut, Castanea dentata. Forest Ecology and Management 532: 120824.
  28. .
  29. Gustafson, NW**, JJ Couture, HJ Dalgleish. 2023. Herbivory, plant traits and
  30. nectar chemistry interact to affect the community of insect visitors and pollination
  31. in common milkweed, Asclepias syriaca. Oecologia 201(1): 91-105.
  32. **Smailys, J., *Jiang, F., *Prioleau, T., *Kelley, K., ***Mitchell, O., $Nour, S.,
  33. $Ali, L., Buchser, W., Zavada, L., and Hinton. S.D. (2023). The DUSP Domain of
  34. Pseudophosphatase MK-STYX Interacts with G3BP1 to Decrease Stress Granules.
  35. Archives Biochemistry and Biophysics; DOI:10.1016/j.abb.2023.109702;
  36. PMID: 37516290
  37. *Hiestand L, *Shen S, *Sloan W, Nasiri H, Lashley D, Kerscher O. (2023) Chemical
  38. Genetics Screen of EVP4593 Sensitivity in Budding Yeast Identifies Effects on Mitochondrial Structure and Function. MicroPubl Biol. doi:  0.17912/micropub.biology.000806. LH and SS are joint first authors.
  39. Leu, M., R.E. Isdell, R.M. Galvin III**, A.J. Rapp*, S. Mason**, D.M. Bilkovic, and R.M. Chambers. 2023. Comparable use of tidal living shorelines and natural-fringe marshes by herons and shorebirds. Ecosphere 14: e4683.
  40. Costante**, D.M. A.M. Haines, and M. Leu. 2023. Only demographic stochasticity separates Endangered from Threatened species when listed under the Endangered Species Act. Wildlife Society Bulletin 2023;e1425.
  41. Rakes, L*. M., and Leu. 2023. First comprehensive description of salt marsh skipper (Panoquina panoquin) (Hesperiidae) natural history: confirmation of a second host plant in Virginia salt marshes. Journal of the Lepidopterists’ Society 77:1-28.
  42. *Ekdahl, L.I., *Salcedo, J.A. , *Dungan, M.M., *Mason, D.V., *Myagmarsuren, D., Murphy, H.A. (2023). Selection on plastic adherence leads to hyper-multicellular strains and incidental virulence in the budding yeast. eLife, 12:e81056.
  43. ***Simmons, E., Cooley, A.M., Puzey, J.R., Conradi Smith, G. (2023) A multi-generational Turing model reproduces transgressive petal phenotypes in hybrid Mimulus. Bulletin of
  44. Mathematical Biology.
  45. ** Boyle, J.H., Strickler, S., Twyford, A., **Ricono, A., Powell, A., Zhang, J., Xu, H.,
  46. Dalgleish, H.J., Jander, G., Agrawal, A., Puzey, J.R. (2023) Temporal matches between
  47. monarch and milkweed population changes over the past 25,000 years. Current Biology
  48. Brittain, C. N.**, Bessler, A. M.**, Elgin, A. S.*, Layko, R. B.*, Park, S.*, Still, S. E., Wada, H., Swaddle, J.P. and Cristol, D. A. 2023. Mercury causes degradation of spatial cognition in a model songbird species. Ecotoxicology and Environmental Safety, 264, 115483.
  49. DOI:10.1016/j.ecoenv.2023.115483
  50. Enos, J. K., Smith, E. B.**, Ward, M. P., Swaddle, J. P. and Hauber M.E. 2023. Increasing perceived predation risk through playbacks shows promise for managing bird abundances in agricultural settings. Ornithological Applications. Duad034. DOI: 10.1093/ornithapp/duad034
  51.  Hendrix, T.C.*, Fernandez-Duque, F.*, Toner, S.*, Hitt, L. G.*, Thady, R. G.*, Massa, M.*, Hagler, S. J.*,Armfield, M.*, Clarke. N.*, Honscheid, P.*, Khalil, S.**, Hawkins, C. E.**, Lantz, S. M.**, Welklin, J. F.**,Swaddle, J. P., Webster, M. S., Karubian, J. 2023. Behavioral differences between ornamented and unornamented male Red-backed Fairywrens (Malurus melanocephalus) in the nonbreeding season. Emu - Austral Ecology, 123, 176-181. DOI:10.1080/01584197.2023.2182224.
  52. Swaddle, J. P., Brewster, B.*, Schuyler, M*. and Su, A*. 2023. Window films increase avoidance of collisions by birds but only when applied to external compared with internal surfaces of windows. PeerJ. 11:e14676. DOI: 10.7717/peerj.14676.
  53. Jacoby, M.L.*, Hogg, G.D.*, Assaad, M.R.*, and Williamson, K.E. (2023) Seasonal trends in
  54. lysogeny in an Appalachian oak-hickory forest soil. Applied and Environmental
  55. Microbiology. doi: 10.1128/aem.01408-23
  56. DiPietro, A.G.*, Bryant, S.A.*, Zanger, M.A.*, and Williamson, K.E. (2023). Understanding
  57. Viral Impacts in Soil Microbial Ecology Through the Persistence and Decay of Infectious
  58. Bacteriophages. Current Microbiology. 80: 276.
  59. Seeley**, ME, Hale, RC, Zwollo, P., Vogelbein, W., Berry, G., and Wargo, AR. (2023).
  60. Microplastics exacerbate virus-mediated mortality in fish. Sci. Total Environ.866-161191.



2022

  1. *Levine, A.J., E.M. Turrietta*, D.M. Bilkovic and R.M. Chambers. 2022. Demographic and trophic analysis of adult grass shrimp (Palaemonetes pugio) from living shoreline and natural tidal marshes in Chesapeake Bay. Northeastern Naturalist 29:207-228.5
  2. **Guthrie, A.G., D.M. Bilkovic, M.M. Mitchell, R.M. Chambers, J. Thompson and R.E. Isdell. 2022. Ecological equivalency of living shorelines and natural marshes for fish and crustacean communities. Ecological Engineering 76:106511
  3. Academia, MA**, HJ Dalgleish. 2022. Osprey nest success: impact of high fishdeliveries with low variation. Journal of Raptor Research 56 (2): 212-219.
  4. ** Qi, Y., $Kuang, D. (Washington University), **Kelley, K., Buchser, W., andHinton, S. D. (2022). Evolutionary Genomic Relationship and Coupling in MK-STYXand STYX Pseudophosphatases. Scientific Reports (accepted February 28, 2022).
  5. *Williard AC, *Switzer HJ, *Howard CA, *Yin R, *Russell BL, *Sanyal R, *Yu S, *MyersTM, *Flood BM, Kerscher O, Young DD. (2022) Protein Modification Employing Non-Canonical Amino Acids to Prepare SUMOylation Detecting Bioconjugates. Pharmaceutics.14(12):2826. doi: 10.3390/pharmaceutics14122826. PMID: 36559319; PMCID:PMC9784311.
  6. Costante**, D.M., A.M. Haines, and Leu. 2022. Threats to neglected biodiversity: Conservation success requires more than charisma. Frontiers in Conservation Science, Vol 2, Article 727517.
  7. *Forehand, A.L., *Myagmarsuren, D., *Chen, Z., and Murphy, H.A. (2022) Variation in pHgradients and FLO11 expression in mat biofilms in environmental isolates of the yeastSaccharomyces cerevisiae. Microbiology Open, 11, e1277.
  8. **Smith, R.D., Puzey, J.R., Conradi Smith, G.D (2022) Population genetics of transposable element load: a mechanistic account of observed overdispersion. 10.1101/2020.11.16.382945v1. PLoS One
  9. Bolkhovitinov, L*,Weselman, B.T.*, Shaw, G.A*., Dong, C*., Giribhattanavar, J.*, and Saha, M.S.. (2022). Tissue Rotation of the Xenopus Anterior-Posterior Neural Axis Reveals Profound but Transient Plasticity at the Mid-Gastrula Stage. J. Dev. Biol.,10, 38. .
  10. David, C.K. *, Sugimura, Y.K., Kallurkar, P.S., Picardo, M.C., Saha, M.S., Conradi Smith, G.D., Del Negro, C.A. (2022). Single cell transcriptome sequencing of inspiratory neurons of the preBötzinger complex in neonatal mice. Sci Data 9, 457.
  11.  Al-Yazeedi T, *^Xu EL, Kaur J, Shakes DC, Pires-daSilva A. (2022) Lagging X chromatidsspecify the orientation of asymmetric organelle partitioning in XX spermatocytes of Auanemarhodensis. Genetics 222(4):iyac159. Editor highlighted article
  12. Ragle JM, *Morrison KN, Vo AA, Johnson ZE, Lopez JH, Rechsteiner A, Shakes DC, Ward JD(2022) NHR-23 and SPE-44 regulate distinct sets of genes during C. elegansspermatogenesis, G3 Genes|Genomes|Genetics 12(11): jkac256.
  13. Thady, R. G.**, Emerson, L. C.** and Swaddle, J. P. 2022. Evaluating acoustic signals to reduceavian collision risk. Peer J. DOI: 10.7717/peerj.13313.
  14. Emerson, L. C.**, Thady, R. G.**, Robertson, B. A. and Swaddle, J. P. 2022. Do lighting conditionsinfluence bird-window collisions? Avian Conservation and Ecology. DOI: 10.5751/ACE-02167-170203.
  15. Dar, N.*, Thompson, C.P., and Williamson, K.E. (2022). Marker gene analysis reveals novelviral genetic diversity in unsaturated soils. Biology and Fertility of Soils. 

 2021

  1. Schrage, K.S.*, J.D. Tupik* and J.D. Allen. 2021. Intertidal zonation of hemichordates in soft sediments. Invertebrate Biology. e12344.
  2. Brocco-French, K.I.* and J.D. Allen. 2021. Cannibalism in newly-metamorphosed juvenile sea stars. Ecology. 102: e03352.
  3. Feng MS*, Bestman JE (2021) Imaging Mitochondrial Dynamics in the Xenopus Central Nervous System (CNS). Cold Spring Harbor protocols 2021.PMC8357028.
  4. **Humphreys, A., A.L. Gorsky, D.M. Bilkovic and R.M. Chambers. 2021. Changes in
    plant communities of low-salinity tidal marshes in response to sea-level rise.
    Ecosphere 12:e03630.
  5. Isdell, R.E., D.M. Bilkovic, A.G. Guthrie**, M.M. Mitchell, R.M. Chambers, M. Leu
    and C. Hershner. 2021. Living shorelines achieve functional equivalence to
    natural fringe marshes across multiple ecological metrics. PeerJ:11815
  6. De La Mater, DS**, JJ Couture, JR Puzey, HJ Dalgleish. 2021. Range-wide,
    intraspecific variation in functional traits and its effect on plant-herbivore
    interactions. American Journal of Botany 108(3): 388-401.
  7.  Steele, MA, HJ Dalgleish, S Marino, AW Bartlow, R Curtis, JA Stratford. 2021. Oak (acorn)–weevil interactions across an extensive latitudinal gradient in eastern North America. Diversity 13: 303. 
  8. **Hepworth, E. M. W. and Hinton, S. D. (2021). The Roles of Pseudophosphatases as Regulators of MAPK signaling. International J. Mol. Sci. 22, 12595.10.3390/ijms222212595.
  9. **Mattei, A., **Smailys, J., and **Hepworth, E. M. W. and Hinton, S. D. (2021). The
    Roles of Pseudophosphatases in Disease. International J. Mol. Sci. 22, 6924. doi:
    10.3390/ijms22136924.
  10. *Yin R, *Song J, Esquela-Kerscher A, Kerscher O. (2021) Detection of Rapidly
    Accumulating Stress-Induced SUMO in Prostate Cancer Cells by a Fluorescent SUMO
    Biosensor. Mol Carcinogen. (12):886-897. doi: 10.1002/mc.23353.
  11. *Pilc EM, *Ganesh S, Kerscher O (2021). A genome-wide screen in Saccharomyces
    cerevisiae identifies Tannic Acid-sensitive mutants. MicroPubl Biol. doi: 10.17912/
    micropub.biology.000358.
  12. Isdell R.E., D.M. Bilkovic, A.G. Guthrie**, M.M. Mitchell, R.M. Chambers, Leu, and C. Hershner. 2021. Living shorelines achieve functional equivalence to natural fringe marshes across multiple ecological metrics. PeerJ 9:e11815.
  13. Mahood, A.L., E. Fleishman, J.K. Balch, F. Fogarty, N. Horning, Leu, M. Zillig**, and B.A. Bradley. 2021. Cover-based allometric estimate of aboveground biomass of a non-native, invasive annual grass (Bromus tectorum L.) in the Great Basin, USA. Journal of Arid Environments 193: 104582.
  14. Haines, A.M., Leu, D.M. Costante**, T.C. Treakle*, C. Parenti*, J.R.B. Miller, and J. Malcom. 2021. Benchmark for the ESA: Having a backbone is good for recovery. Frontiers in Conservation Science 2: Article 630490.
  15. Van Dongen, C. M.*, L. M. Rakes*, J. W. Moriarty*, S. Mason**, and Leu. 2021. First record of Panoquina panoquin (Salt Marsh Skipper) ovipositing on Spartina alterniflora (Smooth Cordgrass). Southeastern Naturalist 20: N19–N21.
  16. **Vallejo-Marin, M., , Friedman, J., Twyford, A., Lepias, O., Ickert-Bond, Streisfeld, M., S.
    Yant, L., van Kleunen, M., Rotter, M., Puzey, J.R. (2021) Population genomic and historical analysis
    suggests a global invasion by bridgehead processes in Mimulus guttatus. Communications
    Biology
  17.  **Kinser, T., **Smith, R., *Lawrence, A., Cooley, A.M., Vallejo-Marin, M., Conradi Smith, G.D., Puzey J.R. (2021)Endosperm-based incompatibilities in hybrid monkeyflowers. The
    Plant Cell
  18.  *Zheng, X., *Om, K., *Stanton, K., Thomas, D., Cheng, P., Eggert, A., Yuan, Y., Puzey, J.R.,
    Cooley, A.M. (2021)The regulatory network for petal anthocyanin pigmentation is shaped by the
    MYB5a/NEGAN transcription factor in Mimulus. Genetics
  19. **DeLaMater, D.S., Couture, J.J., Puzey, J.R., Dalgleish, H.J. (2021)Range-wide variation in
    common milkweed traits and its effect on larvae of the monarch butterfly. American Journal of Botany
  20. Nalamalapu RR,*  Yue M*,  Stone AR*, Murphy S*, Saha MS. (2021). The tweety gene familly: From Embryo to Disease. Front Mol Neurosci. 2021 Jun 28;14:672511. doi:10.3389/fnmol.2021.672511. eCollection 2021.
  21. Li E*, Saha MS. (2021). Optimizing calcium detection methods in animal systems: A sandbox for synthetic biology. Biomolecules Biomolecules , 11(3), 343; 
  22. Beal, J. (2021). (crowd-sourced iGEM publication), Comparative analysis of three studies measuring fluorescence from engineered bacterial genetic constructs. PLOS ONE, https://doi.org/10.1371/journal.pone.0252263 June 7, 2021. William and Mary: Eric Bradley, Stephanie Do, Xiangyi Fang*, Ethan Jones*, Jessica Laury*, Wukun Liu*, Adam Oliver*, Lillian Parr*, Mainak Patel, Margaret Saha, Chengwu Shen*, Tinh Son*, Julia Urban*, Yashna Verma*, Hanmi Zhou* 

  23. *Peterson JJ, *Tocheny CE, Prajapati G, LaMunyon CW, and Shakes DC. (2021) Sub-cellular
    patterns of SPE-6 localization reveal unexpected complexities in C. elegans sperm activation
    and sperm function. G3 Genes|Genomes|Genetics 11(11): jkab288.
  24. *Morrison, KN; **Uyehara, CM; Ragle, J. Matthew; Ward, JD; Shakes, DC. (2021)
    MFP1/MSD-1 and MFP2 co-localize with MSP during C. elegans spermatogenesis.
    microPublication Biology.
  25. **Price, KL, *^Presler M, **Uyehara CM, Shakes DC. (2021) The intrinsically disordered
    protein SPE-18 promotes localized assembly of the major sperm protein in C.
    elegans spermatocytes. Development 148(5): dev195875
  26. Boycott, T. J.**, Mullis, S. M.*, Jackson, B. E. and Swaddle, J. P. 2021 Field testing an “acoustic
    lighthouse”: Combined acoustic and visual cues provide a multimodal solution that reduces
    avian collision risk with tall human-made structures. PLOS ONE. DOI:
    10.1371/journal.pone.0249826.
  27. Werrell, A. K.**, Klug, P. E., Lipcius, R. N. and Swaddle, J. P. 2021 A Sonic Net reduces damage to
    sunflower by blackbirds (Icteridae): implications for broad-scale agriculture and crop
    establishment. Crop Protection. DOI: 10.1016/j.cropro.2021.105579.
  28. Samuels-Fair, M.*, Martins, M. J. F., Lockwood, R., Swaddle, J. P. and Hunt, G. 2021 Temporal
    shifts in ostracode sexual dimorphism from the Late Cretaceous to the late Eocene of the U. S.
    Coastal Plain. Marine Micropaleontology. DOI: 10.1016/j.marmicro.2020.101959.
  29. Zwollo, P., Quddos**, F., Bagdassarian, C., Seeley**, ME, Hale, RC, Abderhalden*, L.
    (2021). Polystyrene microplastics reduce abundance of developing B cells in rainbow
    trout (Onchorhynchus Mykiss) Primary cultures. Fish and Shellfish Immunology. 114;111
  30.  Quddos**, F., and Zwollo, P. (2021). A BCWD-resistant line of rainbow trout is less
    sensitive to cortisol impanat-induced changes in IgM response as compared to a
    susceptible (control) line. Dev. Comp. Immunol. 116.

2020


  1. Trackenberg, S.N.*, E.L. Richardson** and J.D. Allen. 2020. Effects of embryo energy, egg size, and larval food supply on the development of asteroid echinoderms. Ecology and Evolution. 10:7839-7850.
  2. *Salomon, M.S., *Malapati, S.H., *O’Dwyer, J., *Lopez Silva, C., *Williams, C.C., *Barbeau,
    M.C., *Yip, D., #Punzalan, P., *Nagle, V.L., Hinton, S.D., Roggero, V.R., Allison, L.A. (2020)
    Mislocalization of cancer-associated thyroid hormone receptor mutants. Nuclear Receptor
    Research:
  3. Scoville, S.A., Varian-Ramos, C.W., *Adkins, G.A., Swaddle, J.P., Saha, M.S. & Cristol, D.A. 2020. Mercury delays cerebellar development in a model songbird species, the zebra finch. Ecotoxicology 29:1128-1137.
  4. **Spickler, J.S., Swaddle, J.P., *Gilson, R.L., Varian-Ramos, C.W. & Cristol, D.A. 2020. Sexually selected traits as bioindicators: Exposure to mercury affects carotenoid-based male bill color in zebra finches Ecotoxicology 29:1138-1147.
  5. Ackerman, J.T., Herzog, M.P., Evers, D.C., Cristol, D.A., Kenow, K.P., Heinz, G.H., Lavoie, R.A., **Brasso, R.L., Mallory, M.L., Provencher, J.F., Braune, B.M., Matz, A., Schmutz, J.A., Eagles-Smith, C.A., Savoy, L.J., Meyer, M.W., & Hartman, C.A. 2020. Synthesis of maternal transfer of mercury in birds: Implications for altered toxicity risk. Environmental Science & Technology 54:2878-2891. doi:10.1021/acs.est.9b06119.
  6. Kula, AAR***, MH Hey*, JJ Couture, PA Townsend, HJ Dalgleish. 2020.
    Intraspecific competition and damage severity affect size, quality and induced
    structural and chemical defenses in an herbaceous perennial (Asclepias syriaca)
    Plant Ecology 221: 421-430.
  7. Ricono, A**+, NW Gustafson**+, E Eichenberger*, K Stahl*, H Call*, JJ Couture, JR
    Puzey, and HJ Dalgleish+. 2020. Fine-scale spatial structuring of genotypes and
    phenotypes in natural populations of Asclepias syriaca. Perspectives in Plant
    Ecology, Evolution & Systematics 45, 125546. + Contributed equally
  8. *Salomon MS, *Malapati SH, *O’ Dwyer J, *Silva CL, *Williams CC, Barbeau MC,
    *Yip D, *Punzalan P, *Nagle VL, Hinton SD, Roggero VR, Allison LA. Mislocalization
    of Cancer-associated Thyroid Hormone Receptor Mutants. Nuclear Receptor Research.
    92020;2020:https://web.archive.org/web/20210227193123/https://www.kenzpub.com/journ
    als/nurr/inpress/2020/101453/. PMCID: PMC8909557.
  9. Jirinec, V.**, C. J. Smith**, A. Deverakonda*, and Leu. 2020. Notes from Wood Thrush (Hylocichla mustelina) telemetry: Synchronous tail replacement in prebasic molt and single-male nest provisioning. The Wilson Journal of Ornithology 132: 415-421.
  10. Williamson, M.**, E. Fleishman, R. Mac Nally, J. Chambers, B. Bradley, D. S. Dobkin, D. Board, F. Fogarty**, N. Horning, Leu, and M. Wohlfeil*. 2020. Associations of fire, livestock grazing, topography, and climate with occurrence and local prevalence of cheatgrass (Bromus tectorum) in the central Great Basin. Biological Invasion 22: 663–680.
  11.  **Ricono, A., **Gustafson, N., **Eichenberger, E., **Stahl, K., **Call, H., Puzey, J.R.
    Dalgleish, H.J., (2020) Fine-scale spatial structuring of genotypes and phenotypes in natural populations of Asclepias syriaca. Perspectives in Plant Ecology, Evolution and Systematics
  12. Scoville SA, Varian-Ramos CW, Adkins GA*, Swaddle JP, Saha MS, Cristol DA. (2020). Mercury delays cerebellar development in a model songbird species, the zebra finch. Ecotoxicology Oct;29(8):1128-1137. doi: 10.1007/s10646-020-02270-9.Epub 2020 Aug 22.
  13. Beal J, Farny NG, Haddock-Angelli, Selvarajah V., Baldwin GS, Buckley-Taylor R, Gershater, M., Kiga D, Marken J,  Sanchania V., Sison A., Workman CT, & iGEM Interlab Study Contributors [includes all undergraduate members of the iGEM team and Saha M. (2020) Robust estimation of bacterial cell count from optical density. Communications Biology 3, Article number: 512. 
  14. Ablondi EF*, Paudel S#, Sehdev M*, Marken JP*, Halleran AD*, Rahman A, Kemper P, Saha MS. (2020). Fluorescent Calcium Imaging and Subsequent In Situ Hybridization for Neuronal Precursor Characterization in Xenopus laevis. Journal of Visualized Experiments JoVE. e60726, doi:10.3791/60726
  15. Solini GE*, Pownall ME*, Hillenbrand MJ*, Tocheny CE*, Paudel S#, Halleran AD*, Bianchi CH#, Huyck RW#, Saha MS (2020). Xenopus embryos show a compensatory resonse following perturbation of the Notch signaling pathway. Dev Biol. Vol. 460, Issue 2, 15 April 2020, pp. 99-107
  16. Ragle JM, *Aita AL, *Morrison KN, Martinez-Mendez R, Saeger HN, Ashley GA, Johnson LC,
    Schubert KA, Shakes DC, Ward JD. (2020) The conserved molting/circadian rhythm
    regulator NHR-23/NR1F1 serves as an essential co-regulator of C. elegans spermatogenesis.
    Development. 147(22):dev193862.
  17. Hawkins, C. E.**, Ritrovato, I. T.* and Swaddle, J. P. 2020. Traffic noise alters individual social
    connectivity, but not space-use, of red-backed fairywrens. Emu - Austral Ecology, Oct 24, 1-9.
    DOI: 10.1080/01584197.2020.1830706.
  18.  Swaddle, J. P., Emerson, L. C.**, Thady, R. G.** and Boycott, T. J.** 2020. Ultraviolet-reflective film applied to windows reduces the likelihood of collisions for two species of songbird. PeerJ, 8, 9.DOI: 10.7717/peerj.9926.
  19.  Martins, M. J. F, Hunt, G., Thompson, C. M.*, Lockwood, R., Swaddle, J. P. and Puckett, T. M.
    2020. Shifts in sexual dimorphism across a mass extinction: implications for sexual selection as a factor in extinction risk. Proceedings of the Royal Society of London B: Biological Sciences, 287, 1933. DOI:10.1098/rspb.2020.0730
  20. Scoville, S. A., Varian-Ramos, C. W., Saha, M. S., Swaddle, J. P., Adkins, G. A.* and Cristol, D. A.
    2020. Mercury delays cerebellar development in a model songbird species, the zebra finch.
    Ecotoxicology, 8. DOI:10.1007/s10646-020-02270-9
  21. Spickler, J. L.**, Swaddle, J. P., Gilson, R. L.*, Varian-Ramos, C. W. and Cristol, D. A. 2020. Sexually-selected traits as bioindicators: Exposure to mercury affects carotenoid-based male bill color in zebra finches. Ecotoxicology, 8. DOI:10.1007/s10646-020-02271-8.
  22. Payne, A.T.*, Davidson, A.J.*, Kan, J., Peipoch, M., Bier, R. and Williamson, K.E. (2020).
    Widespread cryptic viral infections in lotic biofilms. Biofilm.
  23. Smith**, M., and Zwollo., P. (2020). Transient increase in abundance of B lineage but
    not myeloid-lineage cells in anterior kidney of sockeye salmon during return migration to
    the natal grounds. Fish Shellfish Immunol. 107; 395-402.

2019

  1. Abdel-Raheem, S.T.* and J.D. Allen. 2019. Developmental consequences of temperature and salinity stress in the sand dollar Dendraster excentricus. Biological Bulletin. 237: 227-240. **Editor's Pick**
  2. Allen, J.D., E.L. Richardson**, D. Deaker, A. Aguera, M. Byrne. 2019. Larval cloning in the crown-of-thorns sea star, a keystone coral predator. Marine Ecology Progress Series. 609: 271-276.
  3. **Femia, M.R., **Evans, R.M., **Zhang, J., *Sun, X., *Lebegue, C.J., Roggero, V.R., Allison,
    L.A. (2019) Mediator subunit MED1 modulates intranuclear dynamics of the thyroid hormone
    receptor. Journal of Cellular Biochemistry 2019, 1-18
  4. **Anyetei-Anum, C.S., **Evans, R.M., *Back, A.M., Roggero, V.R., Allison, L.A. (2019)
    Acetylation modulates thyroid hormone receptor intracellular localization and intranuclear
    mobility. Molecular and Cellular Endocrinology, 495: 110509.
  5. Gorsky, A.L.,*G.A. Racanelli, *A.C. Belvin and R.M. Chambers. 2019. Greenhouse gas
    flux from stormwater ponds in southeastern Virginia (USA). Anthropocene 28.
    doi 10.1016/j.ancene/2019.100218.
  6. Balascio, N.L., J.M. Kaste, *M.G. Meyer, *M. Renshaw, *K.L. Smith and R.M.
    Chambers. 2019. A high-resolution mill pond record from eastern Virginia
    reveals the impact of past landscape changes and regional pollution history.
    Anthropocene 25. doi 10.1016/j.ancene/2019.100190.
  7. **Sutter, L.A., R.M. Chambers, M. Karp* and J.E. Perry. 2019. A test of top-down
    control on plant production and nutrient quality in low-salinity tidal marshes.
    Aquatic Science 81:16-25
  8. Struckman, S*, JJ Couture, MD LaMar, HJ Dalgleish. 2019. The demographic effects
    of functional traits: An integral projection model approach reveals population-
    level consequences of reproduction-defense tradeoffs. Ecology Letters: 22: 1396-
    1406. doi: 10.1111/ele.13325
  9. Boyle, JH***, HJ Dalgleish, and JR Puzey. 2019. Reply to Wepprich and Ries et al.:
    Alternative methods do no provide support for the contribution of GM crops to
    monarch decline. Proceedings of the National Academy of Sciences.
  10. Boyle, JH***, HJ Dalgleish, and JR Puzey. 2019. Monarch butterfly and milkweed
    declines substantially predate the use of genetically modified crops. Proceedings of
    the National Academy of Sciences.
  11. Ricono, A**, R Dixon*, I Eaton*, CM Brightbill*, Y Yaziji*, JR Puzey and HJ
    Dalgleish. 2019. Long and short-term responses of Asclepias species differ in respect
    to fire, grazing, and nutrient addition. American Journal of Botany. 105: 2008-2017.
  12. *Cao, Y., *Banks, A., *Mattei, A., + Riddick, A., *Reed, K., *Zhang, A., *Pickering, E.,
    and Hinton, S. D. (2019). Pseudophosphatase MK-STYX alters histone deacetylase 6
    cytoplasmic localization, decreases its phosphorylation, and increases detyrosination of
    tubulin. International J. Mol. Sci. 20, 1455. DOI: 10.3390/ijms20061455
  13. *Yin R, *Harvey C, Shakes D, Kerscher O. (2019) Localization of SUMO-Modified Proteins
    using fluorescent SUMO-Trapping Proteins. J Vis Exp. (146), e59576. doi: 10.3791/59576.
  14. **Simpson DT, *Teague MS, *Weeks JK, Kaup BZ, Kerscher O, Leu M. (2019) Habitat
    amount, quality, and fragmentation associated with prevalence of the tick-borne pathogen
    Ehrlichia chaffeensis and occupancy dynamics of its vector, Amblyomma americanum. Landsc
    Ecol. 34:2435-2449. doi: 10.1007/s10980-019-00898-5.
  15. *Soren Struckman, John Couture, Drew LaMar, and Harmony Dalgleish, The demographic effects of functional traits: an integral projection model approach reveals population-level consequences of reproduction-defence trade-offs, Ecology Letters 22 (9) (2019). [doi:10.1111/ele.13325]
  16. Simpson, D. T.**, M. S. Teague*, J. K. Weeks*, B.Z. Kaup*, O. Kerscher, and Leu. 2019. Habitat amount, quality, and fragmentation associated with prevalence of the tick-borne pathogen Ehrlichia chaffeensis and occupancy dynamics of its vector, Amblyomma americanum. Landscape Ecology 34: 2435 - 2449.
  17. Leu, M., A. M. Haines, C. E. Check*, D. M. Costante*, J. C. Evans*, M. A. Hollingsworth*, I. T. Ritrovato*, A. M. Rydberg*, A. M. Sandercock*, K. L. Thomas*, and T. C. Treakle*. 2019. Temporal analysis of threats causing species endangerment in the United States. Conservation Science and Practice 2019; 1:e78.
  18. Simpson, D. T.**, M. S. Teague*, J. K. Weeks*, A. D. Lewis*, P. M. D’Addio*, J. D. Moore*, J. A. Thompson*, A. C. Harris*, R. T. Cannella*, Z. Kaup, O. Kerscher, M. Leu. 2019. Influence of seasonal and microclimatic weather patterns on the tick-borne pathogen Ehrlichia chaffeensis. Journal of Medical Entomology 56: 162-168.
  19. *Oppler, Z.J., *Parrish, M.E., and Murphy, H.A. (2019) Variation at an adhesin locus suggests the
    possibility of self-discrimination in the yeast Saccharomyces cerevisiae. Proceedings of
    the Royal Society B. 286:20191948.
  20. *Lenhart, B.A., *Meeks, B., and Murphy, H.A. (2019) Variation in filamentous growth and
    response to quorum-sensing compounds in environmental isolates of Saccharomyces
    cerevisiae. G3: Genes, Genomes, Genetics 9:1533-44.
  21. **Smith, R., **Kinser, T., Smith, G.D., Puzey, J.R., (2019) Likelihood ratio test(s) for
    homeolog expression bias. BMC Bioinformatics, 20:149
  22.  **Edger, P., Poorten, T., VanBuren, R., Hardigan, M., Colle, M., McKain, M., **Smith, R.,
    **Teresi, S., Nelson, A., Wai, J., Alger, E., Bird, K., Yocca, A., Pumplin, N., Ou, S., Ben-Zvi, G.,
    Brodt, A., Baruch, K., Swale, T., Shiue, L., Acharya, C., Cole, G., Mower, J., Childs, K., Jiang,
    N., Lyons, E., Freeling, M., Puzey, J.R., Knapp, S. (2019) Origin and Evolution of the
    Octoploid Strawberry Genome. Nature genetics (2019): 1.
  23. Paudel S**#, Ablondi E,*# Sehdev M*, Marken J*, Halleran A*, **Rahman A, Kemper P, Saha MS., (2019). Calcium Activity Dynamics Correlate with Neuronal Phenotype at a Single Cell Level and in a Threshold-Dependent Manner.  Int. J. Mol. Sci-Fi. April 16:20(8):  doi: 10.3390/ijms20081880
  24. Picardo MCD, Sugimura YK, Dorst KE*, Kallurkar PS, Akins VT, Ma X, Teruyama R, Guinamard R, Kam K, Saha MS, Del Negro C. (2019) Trpm4 ion channels in pre-Bötzinger complex interneurons are essential for breathing motor pattern but not rhythm. PLoS Biol 17(2): e2006094. 
  25. *Yin R, *Harvey C, Shakes DC, Kerscher O. (2019) Localization of SUMO-modified Proteins
    Using Fluorescent Sumo-trapping Proteins. J Vis Exp. 146.
  26.  Mahmoud, A., Atwater, B.*, Pike, R., Williamson, K., Kranbuehl, D., and Schniepp, H.
    (2019). High-Purity Boron Nitride Nanotubes via High-Yield Hydrocarbon Solvent
    Processing. Chemistry of Materials. Published online Oct. 11, 2019.
  27. Moore*, C. Hennessey*, E., Smith**, M., Epp, L., and Zwollo, P. (2019). Innate Immune
    Cell Signatures in a BCWD-Resistant Line of Rainbow Trout Before and After In Vivo
    Challenge With Flavobacterium psychrophilum. Dev. Comp. Immunol. 90. 47-54.

2018

  1. Harmon, E.A.* and J.D. Allen. 2018. Predator-induced plasticity in egg capsule deposition in the mudsnail, Tritia obsoleta. Marine Ecology Progress Series. 586: 113-125
  2. **Anyetei-Anum, C.A., Roggero, V.R., Allison, L.A. (2018) Thyroid hormone receptor localization
    in target tissues. Journal of Endocrinology, 237, R19-R34. http://dx.doi.org/10.1530/JOE-17-
    0708
  3. **Zhang, J., Roggero, V.R., Allison, L.A. (2018) Nuclear import and export of the thyroid
    hormone receptor. Chapter 3 in Thyroid Hormone, G. Littwack, ed., Vitamins and Hormones
    106, 45-66. (invited book chapter)
  4. **Cook, C.E., A. M. McCluskey* and R.M. Chambers. 2018. Impacts of invasive
    Phragmites australis on diamondback terrapin nesting in Chesapeake Bay.
    Estuaries & Coasts 41:966-973.
  5. *Grubbs, S.P., H. Funkhouser*, P. Myer*, M. Arendt, J. Schwenter and R.M.
    Chambers. 2018. To BRD or not to BRD? A test of bycatch reduction devices
    for the blue crab fishery. North American Journal of Fisheries Management
    38:18-23.
  6. **Howie, M.G., *Jackson, A.K. & Cristol, D.A. 2018. Spatial extent of mercury contamination in birds and their prey on the floodplain of a contaminated river. Science of the Total Environment 630:1446-1452. doi: 10.1016/j.scitotenv.2018.02.272.
  7. **Paris, O.J., Swaddle, J.P. & Cristol, D.A. 2018. Exposure to dietary methyl-mercury solely during embryonic and juvenile development halves subsequent reproductive success in adult zebra finches. Environmental Science & Technology 52:3117-3124. doi: 10.1021/acs.est.7b04752.
  8. **Ebers Smith, J.H., Cristol, D.A. & Swaddle, J.P. 2018. Experimental infection and clearance of coccidian parasites in mercury-exposed zebra finches. Bulletin Environmental Contamination Toxicology 100:89-94. doi: 10.1007/s00128-017-2246-8
  9. **Greene, V.W. Moseley, D.L., Swaddle, J.P. & Cristol, D.A. 2018. Attractiveness of male zebra finches is not affected by exposure to an environmental stressor, dietary mercury. Condor 120:125-136.
  10.  Sawaya, GM*, AS Goldberg*, MA Steele, and HJ Dalgleish. 2018. Environmental
    variation shifts the relationship between trees and scatterhoarders along the
    continuum from mutualism to antagonism. Journal of Integrative Zoology. 13: 319-330.
  11. Elwood, EE*, NI Lichti***, SF Fitzsimmons, and HJ Dalgleish. 2018. Scatter-hoarders
    drive long- and short-term population dynamics of a nut-producing tree, while
    weevils and herbivores have little effect. Journal of Ecology. 106:1191–12
  12. Ohkuni K, Pasupala N, Peek J*, Holloway GL, Sclar* GD, Levy-Myers R*, Baker RE,
    Basrai MA, Kerscher O. (2018) SUMO-Targeted Ubiquitin Ligases (STUbLs) Reduce the
    Toxicity and Abnormal Transcriptional Activity Associated With a Mutant, Aggregation-Prone
    Fragment of Huntingtin. Front Genet. 9:379. doi: 10.3389/fgene.2018.00379.
  13. **Simpson DT, *Teague MS, *Weeks JK, *Lewis AD, *D’Addio PM, *Moore JD,
    *Thompson JA, *Harris AC, *Cannellaa RT, Kaup BZ, Kerscher O, Leu M. (2018) Broad,
    Multi-Year Sampling Effort Highlights Complex Dynamics of the Tick-Borne Pathogen
    Ehrlichia chaffeensis (Rickettsiales: Anaplasmatacae). J Med Entomol. 56(1):162-168. doi:
    10.1093/jme/tjy171.
  14. *Peek J, *Harvey C, *Gray D, *Rosenberg D, *KollaL, *Levy-Myers R, *Yin R,
    McMurry JL, Kerscher O. (2018) SUMO targeting of a stress-tolerant Ulp1 SUMO protease.
    PLoS ONE. 13(1):e0191391. doi: 10.1371/journal.pone.0191391.
  15. Sommer, N.*, N. Moody**, S. Lantz**, Leu, J. Karubian, and J. Swaddle. 2018. Red backed fairy wrens adjust habitat use in response to dry season fires. Austral Ecology 43: 876-889.
  16. Scholer, M. N.**, Leu, and J. R. Belthoff. 2018. Patterns of co-occurrence in woodpeckers and nocturnal cavity-nesting owls within an Idaho forest. Avian Conservation and Ecology 13:18.
  17. *Deschaine, B.M., *Heysel, A.R., *Lenhart, B.A., and Murphy, H.A. (2018) Biofilm formation and
    toxin production provide a fitness advantage in mixed colonies of environmental yeast
    isolates. Ecology and Evolution 8:5541-5550.
  18. **Ricono, A., **Dixon, R., **Eaton, I., **Brightbill, M., **Yaziji, Y., Dalgleish, H.D., Puzey,
    J.R. (2018) Long and short term responses of Asclepias species to manipulation of fire, grazing,
    and nutrient treatments. American Journal of Botany 105(12), 2008-2017.
  19. Sudip Paudel**#, Regan Sindalar* #, Margaret Saha, (2018). "Calcium Signaling in Vertebrate Development and Its Role in Disease,"  International Journal of Molecular Science, 11(11), 3390  .  #Contributed equally.  
  20. Dong, C.*, Paudel, S**., Amoh, N*., Saha, M.S. (2018) Expression of trpv channels during Xenopus laevis embryogeneis.  Gene Expression Patterns, Dec. 30: 64-70.
  21. Kalen Clifton *,  Ethan Jones *, Sudip  Paudel**, John Marken *, Callan Monette *, Andrew Halleran *,  Lidia Epp, Margaret Saha, (2018). The Genetics Insulator RiboJ Increases Expression of Insulated Genes, Journal of Biological Engineering, 12:23 Oct. 29, doi:  (2018)
  22. ME Pownall * & MS Saha, (2018).  "Histological observation of teratogenic phenotypes induced in frog embryo assays," Methods in Molecular Biology 1797:309-323. doi: 10.1007/978-1-4939-7883-0_16.
  23. Pownall, ME, Cutler RR,  Saha, M.S. (2018).  Transcriptome of Xenopus andrei, an octoploid frog, during embryonic development.  Data in Brief, Vol. 19, Aug. 2018, 501-505.  
  24. Parthasarathy R*, Monette CE*, Bracero S*, Saha  MS, "Methods for field measurement of antibiotic concentrations: limitations and outlook."  FEMS Microbiology Ecology (05 June 2018), .
  25. Tandonnet S., **Farrell M.C., Koutsovoulos G.D., Blaxter M.L., Parihar M, Sadler P.L., Shakes
    D.C., Pires da Silva A. (2018) Sex- and gamete-specific patterns of X chromosome
    segregation in a three-gendered nematode. Current Biology 28, 1-7. Featured by Newsweek,
    Daily Beast, Daily Press. Faculty of 1000 selected.
  26. Sommer, N.*, Moody, N.*, Lantz, S.** Leu, M., Karubian, J. O. and Swaddle, J. P. 2018 Red-backed
    fairywrens adjust habitat use in response to dry season fires. Austral Ecology. DOI:
    10.1111/aec.12629
  27. Paris, O. J.**, Swaddle, J. P. and Cristol, D. A. 2018. Exposure to dietary methyl-mercury solely
    during embryonic and juvenile development halves subsequent reproductive success in adult
    zebra finches. Environmental Science and Technology. DOI:10.1021/acs.est.7b04752.
  28. Greene, V. A.**, Swaddle, J. P., Moseley, D. M. and Cristol, D. A. 2018. Attractiveness of male
    zebra finches is not affected by exposure to an environmental stressor, dietary mercury. The
    Condor: Ornithological Applications. DOI: 10.1650/condor-17-19.1
  29. Green, J.C.*, Rahman, F.*, Saxton, M.A., Williamson, K.E. (2018). Quantifying aquatic viral
    community change associated with stormwater runoff in a wet retention pond using
    metagenomic time series data. Aquatic Microbial Ecology 81(1): 19-35.